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Support #670

Install Galaxy Project on FreeBSD

Added by Daniel Curtis about 9 years ago. Updated about 9 years ago.

Status:
Suspended
Priority:
Normal
Assignee:
Daniel Curtis
Category:
-
Target version:
FreeBSD 9
Start date:
10/08/2015
Due date:
% Done:

10%

Estimated time:
3.00 h
Spent time:
2.00 h

Description

This is a guide on installing the Galaxy Project along with Nginx and PostgreSQL on FreeBSD 9.

Prepare the Environment

  • Make sure the system is up to date:
    pkg update && pkg upgrade
  • Add the Galaxy user
    pw add user -n galaxy -m -s /bin/sh -c "Galaxy"
  • Install a few dependencies:
    pkg install python27 git gcc gmake autoconf automake libtool bison readline sqlite3 cmake postgresql94-client postgresql-libpqxx py27-pip py27-numpy py27-cheetah

Install Galaxy Project

  • Switch to the galaxy user:
    su - galaxy
  • Download the latest source code:
    git clone -b master https://github.com/galaxyproject/galaxy/
  • Then exit the galaxy user back into root:
    exit
    cd /home/galaxy/galaxy
  • Install the python dependencies:
    pip install -r /path/to/requirements.txt
  • Next test that galaxy is setup and running correctly:
    sh run.sh

Resources

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